The whole strange thing happened with a commie station once, in a system with "rich industrial communist tech level 11 or 12" somewhere in the deeper southeast of galactic map 1, near the end of the route of the travel mission.
I think I had a Longshot ship then. All other stations in Commie Territory I visited did not have that bug. I travelled through the system once before, but could not land, as the station was destroyed (!) in front of my eyes. Second time I travelled into the system, I could not land, fly-through station.
The Tianve Pulsar Fly-Through happened in a Josher.
I have been using Version 1.65 since playing Oolite.
Perhaps this helps?
Greetings,
Lestradae
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